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MiGA

The Microbial Genomes Atlas

http://microbial-genomes.org

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Team

Luis M. Rodriguez-R

Kostas Konstantinidis

Posts

Members

Info

Marjolein Hooykaas

Update distances

Dear MiGA team, I used TypeMAT and NCBI Prok about a year ago on my genome assembly to obtain information on taxonomy. When I revisited the results page I chose to click on 'update/recalculate distances', because apparently the database had been updated. Now the closest…

1

Question

Dear MiGA Team, I used Online MiGA for the taxonomic classification of our MAGs against the genomes in the NCBI RefSeq database using amino acid identity (AAI). The software gives us the closest relative in the database and the AAI percentage. The reviewers of our paper asked us…

2

TinaKellerCosta

Server Migration still ongoing?

Dear MiGA Team, when do you expect to have the website back to normal operations? Thank you. Tina

3

server problems?

Hi all, on http://microbial-genomes.org/query_datasets I get …

3

Broken htmls?

Dear MIGA team, since a few days the htmls produces by miga seem to be somehow broken. Distances are not loading. Are you aware of it? Colleagues have the same problem. Downloading the html indicates broken code as well. Best, …

1

Difference NCBI Prok - TypeMat

Hi, I try to taxonomically annotate an assembles isolate. I ran it as query against Typemat and NCBI Prok online. There is a huge difference regarding the p-values from class level on. I would have expected, that the results are more similar. What would you suggest to use for…

6

Feature request: search function for results

Hi all, would it be possible to extend the web interface (results) with a search function? I uploaded many sequences and have trouble finding the results I'm looking for. This would be great. :)

1

"Get access to MAGs"

Hello! I did an online analysis of a assembled genome of an isolate against the biogas microbiome reference database. For one isolate I got a hit: 99% identity to a MAG --> can I download this MAG? Do I get any additional information on this MAG, like source, sequencing method,…

5

Job running for 21 hours+?

I'm using MiGA for the first time and submitted a job yesterday (http://enve-omics.ce.gatech.edu:3000/query_datasets/M:YNA_VBI) that is still running after 21 hours and appears to be still at the cds step. Is this correct? Is the 3 hour runtime an outdated estimate? Or have I…

2