Dear MiGA team, I used TypeMAT and NCBI Prok about a year ago on my genome assembly to obtain information on taxonomy. When I revisited the results page I chose to click on 'update/recalculate distances', because apparently the database had been updated. Now the closest…
Dear MiGA Team, I used Online MiGA for the taxonomic classification of our MAGs against the genomes in the NCBI RefSeq database using amino acid identity (AAI). The software gives us the closest relative in the database and the AAI percentage. The reviewers of our paper asked us…
Difference NCBI Prok - TypeMat
Hi, I try to taxonomically annotate an assembles isolate. I ran it as query against Typemat and NCBI Prok online. There is a huge difference regarding the p-values from class level on. I would have expected, that the results are more similar. What would you suggest to use for…
"Get access to MAGs"
Hello! I did an online analysis of a assembled genome of an isolate against the biogas microbiome reference database. For one isolate I got a hit: 99% identity to a MAG --> can I download this MAG? Do I get any additional information on this MAG, like source, sequencing method,…
Job running for 21 hours+?
I'm using MiGA for the first time and submitted a job yesterday (http://enve-omics.ce.gatech.edu:3000/query_datasets/M:YNA_VBI) that is still running after 21 hours and appears to be still at the cds step. Is this correct? Is the 3 hour runtime an outdated estimate? Or have I…