MiGA

The Microbial Genomes Atlas

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# General

Team

Kostas Konstantinidis

@konstan1

Posts

Members

Info

uloeber

·38d# Online

Broken htmls?

Dear MIGA team, since a few days the htmls produces by miga seem to be somehow broken. Distances are not loading. Are you aware of it? Colleagues have the same problem. Downloading the html indicates broken code as well. Best, …

uloeber

·88d# Online

Feature request: search function for results

Hi all, would it be possible to extend the web interface (results) with a search function? I uploaded many sequences and have trouble finding the results I'm looking for. This would be great. :)

uloeber

·39d# Online

Difference NCBI Prok - TypeMat

Hi, I try to taxonomically annotate an assembles isolate. I ran it as query against Typemat and NCBI Prok online. There is a huge difference regarding the p-values from class level on. I would have expected, that the results are more similar. What would you suggest to use for…

RRettenmaier

·189d# Online

"Get access to MAGs"

Hello! I did an online analysis of a assembled genome of an isolate against the biogas microbiome reference database. For one isolate I got a hit: 99% identity to a MAG --> can I download this MAG? Do I get any additional information on this MAG, like source, sequencing method,…

Joan_Gibert

·199d# CLI

MIGA Intallation error

Hi! I am trying to install MIGA using conda. Everything goes nicely but when I do miga init i got an error: Any ideas?

SpectVS

·200d# General

Batch download datasets?

Hi MiGA development team. I am interested in several protein annotation datasets from a project stored in MiGA, but I was wondering if there is a way to download multiple ones at a time. Many thanks!

PercyLunga

·246d# General

"We're sorry, but something went wrong."

Hi Developers. Could you please assist me. I uploaded genomes to be analysed using the NCBI Prok option. Every time I need to view status of job analysis or completed analysis I get the above message. Could you assit?

ibarraro

·246d# General

"Incomplete response received from server"

Hello dear developers! Every time I try to upload a genome in a fastaQ file I get the infamous message "Incomplete response received from the application". Can you please tell me what could be possibly the problem? Many thanks, I truly appreciate your help :)

Thomas van Gurp

·201d# General

Search Query datasets

Hi Developers! is it possible to extend the search to query and reference datasets? On a related note, is it possible to upload reference datasets from the web UI?

codethekit

·320d# General

MiGA

Broken htmls?

Dear MIGA team, since a few days the htmls produces by miga seem to be somehow broken. Distances are not loading. Are you aware of it? Colleagues have the same problem. Downloading the html indicates broken code as well. Best, …

Feature request: search function for results

Hi all, would it be possible to extend the web interface (results) with a search function? I uploaded many sequences and have trouble finding the results I'm looking for. This would be great. :)

Difference NCBI Prok - TypeMat

Hi, I try to taxonomically annotate an assembles isolate. I ran it as query against Typemat and NCBI Prok online. There is a huge difference regarding the p-values from class level on. I would have expected, that the results are more similar. What would you suggest to use for…

"Get access to MAGs"

Hello! I did an online analysis of a assembled genome of an isolate against the biogas microbiome reference database. For one isolate I got a hit: 99% identity to a MAG --> can I download this MAG? Do I get any additional information on this MAG, like source, sequencing method,…

MIGA Intallation error

Hi! I am trying to install MIGA using conda. Everything goes nicely but when I do miga init i got an error: Any ideas?

Batch download datasets?

Hi MiGA development team. I am interested in several protein annotation datasets from a project stored in MiGA, but I was wondering if there is a way to download multiple ones at a time. Many thanks!

"We're sorry, but something went wrong."

Hi Developers. Could you please assist me. I uploaded genomes to be analysed using the NCBI Prok option. Every time I need to view status of job analysis or completed analysis I get the above message. Could you assit?

"Incomplete response received from server"

Hello dear developers! Every time I try to upload a genome in a fastaQ file I get the infamous message "Incomplete response received from the application". Can you please tell me what could be possibly the problem? Many thanks, I truly appreciate your help :)

Search Query datasets

Hi Developers! is it possible to extend the search to query and reference datasets? On a related note, is it possible to upload reference datasets from the web UI?

One-click download of MiGA results?

Is there a straightforward (or ideally one-click) way to download most or all results of a MiGA analysis of one whole-genome sequence?