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ANI calculations

Hi, Few months ago I run the MiGA NCBI Prok for two of my genomes. The ANI gave a table with the average and standard deviations quite well. Since I noticed that novel genomes have been added to the database, yesterday I re-run my genomes to see the ANIs between my strains and…

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no ANI results + AAI Fraction of proteins shared (%) ="(estimated)"

Hi, I recently run three of my assemblies through MIGA, and for one of them I got weird results regarding ANI and AAI. First, for one of the assemblies there is not ANI table to view. Does is mean that MIGA found no good hits for my genome? …

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Genetic code 4?

Hi, I was wondering if we can change the genetic code, I am working with Mycoplasma related bacteria and they have genetic code 4. I was not able to change this parameter, is it possible? I have the feeling that the wrong genetic code is use as there is too much gene annotated. …

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Job running for 21 hours+?

I'm using MiGA for the first time and submitted a job yesterday (http://enve-omics.ce.gatech.edu:3000/query_datasets/M:YNA_VBI) that is still running after 21 hours and appears to be still at the cds step. Is this correct? Is the 3 hour runtime an outdated estimate? Or have I…

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SLURM support in MiGA

We're working towards deploying MiGA in more platforms. As part of this effort, we've recently simplified the installation (now including anaconda), and have now included support for SLURM! This extends native support to: bash (single-node mode), qsub (Torque), msub (MOAB), and…

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